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Examinando por Autor "Abarca-Ortega, A"

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    Aging is accompanied by T-cell stiffening and reduced interstitial migration through dysfunctional nuclear organization
    (WILEY, 2022)
    Abarca-Ortega, A 
    ;
    Abarca-Ortega, Aldo
    ;
    Corcoles-Lucas, Miguel
    ;
    De la Fuente, Monica
    ;
    Elices, Manuel
    ;
    Gonzalez-Bermudez, Blanca
    ;
    Gonzalez-Sanchez, Monica
    ;
    Guinea, Gustavo, V
    ;
    Kobayashi, Hikaru
    ;
    Plaza, Gustavo R.
    Age-associated changes in T-cell function play a central role in immunosenescence. The role of aging in the decreased T-cell repertoire, primarily because of thymic involution, has been extensively studied. However, increasing evidence indicates that aging also modulates the mechanical properties of cells and the internal ordering of diverse cell components. Cellular functions are generally dictated by the biophysical phenotype of cells, which itself is also tightly regulated at the molecular level. Based on previous evidence suggesting that the relative nuclear size contributes to variations of T-cell stiffness, here we examined whether age-associated changes in T-cell migration are dictated by biophysical parameters, in part through nuclear cytoskeleton organization and cell deformability. In this study, we first performed longitudinal analyses of a repertoire of 111 functional, biophysical and biomolecular features of the nucleus and cytoskeleton of mice CD4(+) and CD8(+) T cells, in both naive and memory state. Focusing on the pairwise correlations, we found that age-related changes in nuclear architecture and internal ordering were correlated with T-cell stiffening and declined interstitial migration. A similarity analysis confirmed that cell-to-cell variation was a direct result of the aging process and we applied regression models to identify biomarkers that can accurately estimate individuals' age. Finally, we propose a biophysical model for a comprehensive understanding of the results: aging involves an evolution of the relative nuclear size, in part through DNA-hypomethylation and nuclear lamin B1, which implies an increased cell stiffness, thus inducing a decline in cell migration.
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    Biomechanical Characterization of Scallop Shells Exposed to Ocean Acidification and Warming
    (FRONTIERS MEDIA SA, 2022)
    Abarca-Ortega, A 
    ;
    Garcia-Herrera, C 
    ;
    Muñoz-Moya, E 
    ;
    Pacheco-Alarcon, M 
    ;
    Abarca-Ortega, Aldo
    ;
    Celentano, Diego J.
    ;
    Lagos, Nelson A.
    ;
    Lardies, Marco A.
    Increased carbon dioxide levels (CO2) in the atmosphere triggered a cascade of physical and chemical changes in the ocean surface. Marine organisms producing carbonate shells are regarded as vulnerable to these physical (warming), and chemical (acidification) changes occurring in the oceans. In the last decade, the aquaculture production of the bivalve scallop Argopecten purpuratus (AP) showed declined trends along the Chilean coast. These negative trends have been ascribed to ecophysiological and biomineralization constraints in shell carbonate production. This work experimentally characterizes the biomechanical response of AP scallop shells subjected to climate change scenarios (acidification and warming) via quasi-static tensile and bending tests. The experimental results indicate the adaptation of mechanical properties to hostile growth scenarios in terms of temperature and water acidification. In addition, the mechanical response of the AP subjected to control climate conditions was analyzed with finite element simulations including an anisotropic elastic constitutive model for a two-fold purpose: Firstly, to calibrate the material model parameters using the tensile test curves in two mutually perpendicular directions (representative of the mechanical behavior of the material). Secondly, to validate this characterization procedure in predicting the material's behavior in two mechanical tests.
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    Enhancing micropipette aspiration with artificial-intelligence analysis
    (CELL PRESS, 2024)
    Abarca-Ortega, A 
    ;
    Abarca-Ortega, Aldo
    ;
    Gonzalez-Bermudez, Blanca
    ;
    Plaza, Gustavo R.
    The micropipette-aspiration technique is commonly used in the field of mechanobiology, offering a variety of measurement types. To extract biophysical parameters from the experiments, numerical analysis is required. Although previous works have developed techniques for the partial automation of these analyses, these approaches are relatively time consuming for the researchers. In this article, we describe the development and application of an artificial-intelligence tool for the completely automatic analysis of micropipette-aspiration experiments. The use of this tool is compared with previous methods and the impressive reduction in the time required for these analyses is discussed. The new tool opens new possibilities for the micropipette-aspiration technique by enabling dealing with large numbers of experiments and real-time measurements. © 2024 Biophysical Society
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    Evaluation of remodeling and geometry on the biomechanical properties of nacreous bivalve shells
    (NATURE PORTFOLIO, 2022)
    Abarca-Ortega, A 
    ;
    Garcia-Herrera, C 
    ;
    Muñoz-Moya, E 
    ;
    Abarca-Ortega, Aldo F.
    ;
    Checa, Antonio G.
    ;
    Harper, Elizabeth M.
    ;
    Lagos, Nelson A.
    Mollusks have developed a broad diversity of shelled structures to protect against challenges imposed by biological interactions(e.g., predation) and constraints (e.g., pCO2-induced ocean acidification and wave-forces). Although the study of shell biomechanical properties with nacreous microstructure has provided understanding about the role of shell integrity and functionality on mollusk performance and survival, there are no studies, to our knowledge, that delve into the variability of these properties during the mollusk ontogeny, between both shells of bivalves or across the shell length. In this study, using as a model the intertidal mussel Perumytilus purpuratus to obtain, for the first time, the mechanical properties of its shells with nacreous microstructure; we perform uniaxial compression tests oriented in three orthogonal axes corresponding to the orthotropic directions of the shell material behavior (thickness, longitudinal, and transversal). Thus, we evaluated whether the shell material’s stress and strain strength and elastic modulus showed differences in mechanical behavior in mussels of different sizes, between valves, and across the shell length. Our results showed that the biomechanical properties of the material building the P. purpuratus shells are symmetrical in both valves and homogeneous across the shell length. However, uniaxial compression tests performed across the shell thickness showed that biomechanical performance depends on the shell size (aging); and that mechanical properties such as the elastic modulus, maximum stress, and strain become degraded during ontogeny. SEM observations evidenced that compression induced a tortuous fracture with a delamination effect on the aragonite mineralogical structure of the shell. Findings suggest that P. purpuratus may become vulnerable to durophagous predators and wave forces in older stages, with implications in mussel beds ecology and biodiversity of intertidal habitats. © 2022, The Author(s).
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    Geographical variability and parasitism on body size, reproduction and shell characteristics of the keyhole limpet Fissurella crassa (Mollusca: Vetigastropoda)
    (ELSEVIER SCI LTD, 2020)
    Abarca-Ortega, A 
    ;
    Garcia-Herrera, C 
    ;
    Abarca-Ortega, Aldo
    ;
    Aldana, Marcela
    ;
    Grenier, Christian
    ;
    Lagos, Nelson A.
    ;
    Pulgar, Jose
    ;
    Roberto Garcia-Huidobro, M.
    ;
    Rodriguez-Navarro, Alejandro B.
    ;
    Varas, Oscar
    Environmental variation may alter biological interactions and their ecological consequences. For instance, in marine ecosystems hosts and parasites are subject to environmental variability across latitudinal gradients, and their co-evolutionary dynamics may be the result of the interplay with local physical-chemical variables in seawater. Thus, assessing the environmental conditions required for a host in order to improve their survival is essential to understand the host-parasite interaction and dynamics. In this study, we evaluated the impact of parasitism by Proctoeces humboldti on the body size and reproduction of the intertidal keyhole limpet Fissurella crassa collected from three populations spanning ca. 1500 km along the latitudinal gradient of the Chilean coast. In addition, for the first time, we explore whether the effect of parasitism can be extended to changes in the organic composition and mechanical properties of the host shell. Our results show that parasitism prevalence and intensity, and body size of F. crassa increased in central Chile (ca. 33°S). Unlike body size, which was greater in parasitized limpets than in non-parasitized limpets at the three study sites, reproductive performance followed this trend only in central Chile populations, with no differences between parasitized and non-parasitized limpets collected in the northern Chilean (ca. 23°S), and lower in parasitized than non-parasitized individuals from the south-central Chile (ca. 37°S). The organic composition of F. crassa shells showed significant differences between parasite conditions (e.g. polysaccharides and water decreased in parasitized limpets) and across sites (e.g. proteins levels increase in shell of parasitized limpets from central Chile, but decreased at south-central Chile). However, variability in shell mechanical properties (e.g. toughness and elastic module) do not showed significant differences across sites and parasitism condition. These results suggest the interplay of both parasitism and environmental fluctuations upon the reproductive performance and morphology of the host. In addition, our result highlight that the host may also trade-offs reproduction, growth and shell organic composition to maintain the shell functionality (e.g. protection for mechanical forces and durophagous predators). © 2020 Elsevier Ltd
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    Lung Function Evaluation Through Computerized Tomography and 3D Reconstruction of Airways: A Body Mass Index Pilot Study
    (SOC CHILENA ANATOMIA, 2020)
    Abarca-Ortega, A 
    ;
    Garcia-Herrera, C 
    ;
    Lizana, Pablo A.
    ;
    Munoz-Cofre, Rodrigo
    ;
    Rodriguez, Jorge Quinones
    ;
    del Sol, Mariano
    Obesity is a worldwide epidemic that has become a risk factor for the development of respiratory problems, meaning it is necessary to generate models that assess lung function in obese patients for proper treatment. The objective of this study was to evaluate a model for analyzing respiratory function according to body composition, by analyzing the structure and function of the airways by computed tomography (CT). Lung function and body fat percentage (BF%) were measured in three male subjects (25 +/- 6 years), with different body mass index (BMI; normal, overweight, obese). A third-dimensional (3D) reconstruction of the airways was performed using CT Trachea, right and left main bronchi and anterior segmental bronchus of the right and left lung were measured. Three measurement points were established for each structure, and the average value of these three points was used for the analysis. An increase in the thickness of the airways wall of the left and right main bronchi and right segmental bronchus was observed as BMI and BF% increased. The same was observed for the percentage of airway wall area (%AWA) and airway resistance in the main and segmental bronchi. The proposed 3D reconstruction model and the three-point analysis simplified image assessment and allowed to observe the problems caused by obesity in lung function.
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    Parasitism by metacercariae modulates the morphological, organic and mechanical responses of the shell of an intertidal bivalve to environmental drivers
    (Elsevier B.V., 2022)
    Abarca-Ortega, A 
    ;
    Garcia-Herrera, C 
    ;
    Aldana, M
    ;
    Duarte, C
    ;
    García-Huidobro, M.R
    ;
    Grenier, C
    ;
    Lagos, N.A
    ;
    Pulgar, J
    ;
    Rodríguez-Navarro, A.B
    ;
    Varas, O
    ;
    Zapata, J
    Environmental variation alters biological interactions and their ecological and evolutionary consequences. In coastal systems, trematode parasites affect their hosts by disrupting their life-history traits. However, the effects of parasitism could be variable and dependent on the prevailing environmental conditions where the host-parasite interaction occurs. This study compared the effect of a trematode parasite in the family Renicolidae (metacercariae) on the body size and the shell organic and mechanical characteristics of the intertidal mussels Perumytilus purpuratus, inhabiting two environmentally contrasting localities in northern and central Chile (ca. 1600 km apart). Congruent with the environmental gradient along the Chilean coast, higher levels of temperature, salinity and pCO2, and a lower pH characterise the northern locality compared to that of central Chile. In the north, parasitised individuals showed lower body size and shell resistance than non-parasitised individuals, while in central Chile, the opposite pattern was observed. Protein level in the organic matter of the shell was lower in the parasitised hosts than in the non-parasitised ones regardless of the locality. However, an increase in polysaccharide levels was observed in the parasitised individuals from central Chile. These results evidence that body size and shell properties of P. purpuratus vary between local populations and that they respond differently when confronting the parasitism impacts. Considering that the parasite prevalence reaches around 50% in both populations, if parasitism is not included in the analysis, the true response of the host species would be masked by the effects of the parasite, skewing our understanding of how environmental variables will affect marine species. Considering parasitism and identifying its effects on host species faced with environmental drivers is essential to understand and accurately predict the ecological consequences of climate change. © 2022
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    Plasticity in organic composition maintains biomechanical performance in shells of juvenile scallops exposed to altered temperature and pH conditions
    (NATURE PORTFOLIO, 2021)
    Abarca-Ortega, A 
    ;
    Garcia-Herrera, C 
    ;
    Abarca-Ortega, Aldo
    ;
    Benitez, Samanta
    ;
    Benjumeda, Isabel
    ;
    Duarte, Cristian
    ;
    Grenier, Cristian
    ;
    Lagos, Nelson A.
    ;
    Lardies, Marco A.
    ;
    Rodriguez-Navarro, Alejandro B.
    ;
    Vargas, Cristian A.
    ;
    Vivanco, Juan F.
    The exposure to environmental variations in pH and temperature has proven impacts on benthic ectotherms calcifiers, as evidenced by tradeoffs between physiological processes. However, how these stressors affect structure and functionality of mollusk shells has received less attention. Episodic events of upwelling of deep cold and low pH waters are well documented in eastern boundary systems and may be stressful to mollusks, impairing both physiological and biomechanical performance. These events are projected to become more intense, and extensive in time with ongoing global warming. In this study, we evaluate the independent and interactive effects of temperature and pH on the biomineral and biomechanical properties of Argopecten purpuratus scallop shells. Total organic matter in the shell mineral increased under reduced pH (~ 7.7) and control conditions (pH ~ 8.0). The periostracum layer coating the outer shell surface showed increased protein content under low pH conditions but decreasing sulfate and polysaccharides content. Reduced pH negatively impacts shell density and increases the disorder in the orientation of calcite crystals. At elevated temperatures (18 °C), shell microhardness increased. Other biomechanical properties were not affected by pH/temperature treatments. Thus, under a reduction of 0.3 pH units and low temperature, the response of A. purpuratus was a tradeoff among organic compounds (biopolymer plasticity), density, and crystal organization (mineral plasticity) to maintain shell biomechanical performance, while increased temperature ameliorated the impacts on shell hardness. Biopolymer plasticity was associated with ecophysiological performance, indicating that, under the influence of natural fluctuations in pH and temperature, energetic constraints might be critical in modulating the long-term sustainability of this compensatory mechanism. © 2021, The Author(s).
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    Possibilities of using T-cell biophysical biomarkers of ageing
    (CAMBRIDGE UNIV PRESS, 2022)
    Abarca-Ortega, A 
    ;
    Abarca-Ortega, Aldo
    ;
    Gonzalez-Bermudez, Blanca
    ;
    Gonzalez-Sanchez, Monica
    ;
    Plaza, Gustavo R.
    ;
    de la Fuente, Monica
    Aging is interrelated with the development of immunosenescence. This article focuses on one of the cell sets of the adaptive immune system, T cells, and provides a review of the known changes in T-cells associated with aging. Such fundamental changes affect both cell molecular content and internal ordering. However, acquiring a complete description of the changes at these levels would require extensive measurements of parameters and, furthermore, important fine details of the internal ordering that may be difficult to detect. Therefore, an alternative approach for the characterization of cells consists in the performance of physical measurements of the whole cell, such as deformability measurements or migration measurements: the physical parameters, complementing the commonly used chemical biomarkers, may contribute to a better understanding of the evolution of T-cell states during aging. Mechanical measurements, among other biophysical measurements, have the advantage of their relative simplicity: one single parameter agglutinates the complex effects of the variety of changes that gradually appear in cells during aging. © 2022 Cambridge University Press. All rights reserved.
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    Single-cell mechanical characterization in constriction-based cytometry
    (PERGAMON-ELSEVIER SCIENCE LTD, 2024)
    Abarca-Ortega, A 
    ;
    Abarca-Ortega, Aldo
    ;
    Alvarez-Lopez, Aroa
    ;
    Castro-Dominguez, Cristina
    ;
    Diaz-Alcaraz, Cristina
    ;
    Garvia-Rodriguez, Maria
    ;
    Gonzalez-Bermudez, Blanca
    ;
    Guinea, Gustavo, V
    ;
    Plaza, Gustavo R.
    Mechanical characterization of suspended cells by constriction-based microfluidic devices has currently various limitations related to the available analysis models. In this work, we propose a new methodology to analyze the experiments. This approach is based on numerical simulations to describe fluid forces and cell deformation and on an extension of the quasi-linear viscoelasticity theory developed by Fung. The cells are considered visco-hyperelastic, homogeneous, and isotropic. The approach allows for assessing the mechanical parameters of individual cells, which is not possible using previous approaches, notably increasing the power of the constriction-based microfluidic technique. A practical procedure to compute mechanical parameters is proposed and demonstrated by analyzing experiments with suspended cells. The methodology developed in this work provides a convenient tool to overcome critical limitations of the state of the art and to leverage the potential of these microfluidic devices. © 2024 The Authors
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